Usage
SSplotRecdevs(replist, subplots = 1:3,
plot = TRUE, print = FALSE, add = FALSE,
uncertainty = TRUE, forecastplot = FALSE,
col1 = "black", col2 = "blue",
col3 = "green3", col4 = "red", legendloc = "topleft",
labels = c("Year", "Asymptotic standard error estimate",
"Log recruitment deviation", "Bias adjustment check",
"Bias adjustment fraction, 1 - stddev^2 / sigmaR^2"),
pwidth = 7, pheight = 7, punits = "in", res = 300, ptsize = 12,
cex.main = 1, plotdir = "default", verbose = TRUE)Arguments
replist
list created by SSoutput
subplots
vector controlling which subplots to create
plot
plot to active plot device?
add
add to existing plot (not yet implemented)
uncertainty
include plots showing uncertainty?
forecastplot
include points from forecast years?
legendloc
location of legend. see ?legend for more info
labels
vector of labels for plots (titles and axis labels)
pwidth
width of plot written to PNG file
pheight
height of plot written to PNG file
res
resolution for PNG file
ptsize
ptsize for PNG file
cex.main
character expansion for plot titles
plotdir
directory where PNG files will be written. by default it will
be the directory where the model was run.
verbose
report progress to R GUI?