Usage
mcmc.out(directory = "c:/mydirectory/", run = "mymodel/",
file = "keyposteriors.sso", namefile = "postplotnames.sso",
names = FALSE, headernames = TRUE, numparams = 1, closeall = TRUE,
burn = 0, thin = 1, scatter = FALSE, surface = FALSE, surf1 = 1,
surf2 = 2, stats = FALSE, plots = TRUE, header = F, sep = "",
print = FALSE)
Arguments
directory
Directory where all results are located, one level above directory
for particular run.
run
Directory with files from a particular run.
file
File containing posterior samples for key parameters. This could be
written by the function SSgetMCMC. namefile
The (optional) file name of the dimension and names of posteriors.
names
Read in names file (T) or use generic naming (F).
headernames
Use the names in the header of file?
numparams
The number of parameters to analyze.
closeall
By default close all open devices.
burn
Optional burn-in value to apply on top of the option in the
starter file and SSgetMCMC. thin
Optional thinning value to apply on top of the option in the
starter file, in the -mcsave runtime command, and in
SSgetMCMC. scatter
Can add a scatter-plot of all params at end, default is none.
surface
Add a surface plot of 2-way correlations.
surf1
The first parameter for the surface plot.
surf2
The second parameter for the surface plot.
stats
Print stats if desired.
header
Data file with header?
sep
Separator for data file passed to the read.table function. print
Send to screen unless asked to print.