show-methods

show,rCGH-method

A method for visualizing an object of class <code>"<links4class>rCGH</links4class>"</code>

methods

A comprehensive pipeline for analyzing and interactively 
    visualizing genomic profiles generated through commercial or custom aCGH
    arrays. As inputs, rCGH supports Agilent dual-color Feature Extraction
    files (.txt), from 44 to 400K, Affymetrix SNP6.0 and cytoScanHD
    probeset.txt, cychp.txt, and cnchp.txt files exported from ChAS or
    Affymetrix Power Tools. rCGH also supports custom arrays, provided data is
    in a suitable format. This package takes over all the steps required for
    individual genomic profiles analysis, from reading files to segmenting
    and annotating genes. This package provides several visualization functions
    (static or interactive) which facilitate individual profiles interpretation.
    Input files can be in compressed format, e.g. .bz2 or .gz.

Frederic Commo

rCGH

Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data

show-methods function

A method for visualizing an object of class <code>"<linkS4class>rCGH</linkS4class>"</code>

show-methods: `show` `"rCGH"`

Description

Arguments