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rGREAT (version 1.4.2)

Client for GREAT Analysis

Description

This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.

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Version

Version

1.4.2

License

GPL (>= 2)

Issues

20

Pull Requests

0

Stars

89

Forks

13

Maintainer

Zuguang Gu

Last Published

April 12th, 2016

Functions in rGREAT (1.4.2)

plotRegionGeneAssociationGraphs-GreatJob-method

Plot region-gene association figures
getEnrichmentTables-GreatJob-method

Get enrichment tables from GREAT web server
availableOntologies-GreatJob-method

All available ontology names
availableCategories-GreatJob-method

Available ontology categories
GreatJob-class

Class to store and retrieve GREAT results
submitGreatJob

Send requests to GREAT web server