GreatJob-class

Class to store and retrieve GREAT results

This package makes GREAT (Genomic Regions Enrichment of 
    Annotations Tool) analysis automatic by constructing a HTTP POST 
    request according to user's input and automatically retrieving results 
    from GREAT web server.

Zuguang Gu

rGREAT

Client for GREAT Analysis

GreatJob-class function

Users don't need to construct by hand, <code><a href="/link/submitGreatJob?package=rGREAT&version=1.4.2" rd-options="" data-mini-rdoc="rGREAT::submitGreatJob">submitGreatJob</a></code> is used to generate a <code>GreatJob-class</code> instance.

Constructor

After submitting request to GREAT server, users can perform following steps:<p></p><p><ul><li>call<code><a href="/link/getEnrichmentTables?package=rGREAT&version=1.4.2" rd-options="" data-mini-rdoc="rGREAT::getEnrichmentTables">getEnrichmentTables</a></code>to get enrichment tables for selected ontologies catalogues.</li><li>call<code><a href="/link/plotRegionGeneAssociationGraphs?package=rGREAT&version=1.4.2" rd-options="" data-mini-rdoc="rGREAT::plotRegionGeneAssociationGraphs">plotRegionGeneAssociationGraphs</a></code>to get associations between regions and genes as well as making plots.</li></ul></p>

GreatJob-class: Class to store and retrieve GREAT results

Description

Arguments

Constructor

Workflow

Details

Examples