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rescue (version 1.0.3)

clusterLouvain: Cluster Cells via Louvain Algorithm

Description

Cluster cells using a NN-network and the Louvain algorithm from the community module in Python

Usage

clusterLouvain(
  nn_network,
  python_path = NULL,
  resolution = 1,
  weight_col = NULL,
  louv_random = F,
  set_seed = T,
  seed_number = 0,
  ...
)

Arguments

nn_network

Constructed nearest neighbor network to use

python_path

Specify specific path to python if required

resolution

Resolution

weight_col

Weight column

louv_random

Random

set_seed

Set seed

seed_number

Number for seed

...

Additional parameters

Value

A character vector of cluster labels