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rescue (version 1.0.3)

constructNN: Nearest Network

Description

Construct a nearest neighbour network based on previously computed PCs

Usage

constructNN(
  reduced_object,
  k_neighbors = 30,
  minimum_shared = 5,
  top_shared = 3,
  verbose = F,
  ...
)

Arguments

reduced_object

PC reduction matrix

k_neighbors

Number of k neighbors to use

minimum_shared

Minimum shared neighbors

top_shared

Keep at ...

verbose

Be verbose

Additional parameters

Value

NN network as igraph object