`install.packages('respirometry')`

547

2.0.0

GPL-3

July 18th, 2024

calc_pcrit

Calculate Pcrit

flush_carb

Estimate carbonate chemistry after a flush

conv_nh4

Convert between units of ammonia (NH3) / ammonium (NH4+)

co2_flush

Calculate CO2 to add to flush reservoir

correct_bubble

Adjust respirometer volume for bubbles

conv_o2

Convert between units of oxygen partial pressure and concentration

make_bins

Make time binning thresholds for MO2 calculations

guess_TA

Estimate total alkalinity from salinity

import_presens

Import data from a PreSens O2 transmitter

max_MO2

Maximum MO2 supported by flow rate

import_firesting

Import data from Pyro Oxygen Logger

import_witrox

Import data from a Loligo Systems Witrox O2 transmitter

guess_when

Estimate when the O2 level will reach a defined level

import_pyroscience_workbench

Import data from Pyroscience Workbench

flush_o2

Estimate dissolved O2 after a flush

predict_pH

Predict pH post-respiration

predict_nh3

Predict NH3 / NH4+ concentration post-respiration

min_flow

Minimum flow rate to support MO2

plot_pcrit

Plot Pcrit

mean_pH

Mean pH by [H+]

peri_pump

Calculate peristaltic pump gaseous flow rate

scale_MO2

Mass-correct metabolic rate

respirometry

Tools for Conducting Respirometry Experiments

closed

Closed respirometry

adj_by_temp

Predict biological parameters at a new temperature

co2_add

Calculate CO2 to add to water

calc_E

Calculate E temperature coefficient

conv_resp_unit

Convert units related to respirometry

flush_water

Find percent of water exchanged after a flush

goal_flush_pH

Calculate goal pH of a flush reservoir to achieve the post-flush goal pCO2

calc_MO2

Calculate metabolic rate

calc_alpha

Calculate the oxygen supply capacity (alpha)

co2_rate

Calculate CO2 to add to a respirometer intake flow

Q10

Parameters of Q10 Temperature Coefficient

RQ

Calculate respiratory quotient

calc_b

Calculate the metabolic scaling coefficient, b