retrocombinator package - RDocumentation

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retrocombinator

An R/C++ package for simulating the evolution of retrotransposons over time.

An example vignette can be found here

The C++ documentation can be found in rcpp_docs

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Version

Install

install.packages('retrocombinator')

Monthly Downloads

4

Version

1.0.0

License

GPL-3

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/drostlab/retrocombinator

Maintainer

Anindya Sharma

Last Published

November 11th, 2021

Functions in retrocombinator (1.0.0)

SelectionParams

Create SelectionParams object

Create FamilyParams object

SimulationParams

Create SimulationParams object

Create OutputParams object

Create SequenceParams object

Create ActivityParams object

Create MutationParams object

Create SeedParams object

Create RecombParams object

Create BurstParams object

is.SequenceParams

Is x a SequenceParams object?

parseSimulationOutput

Input data from CPP output into a list of data frames

Plotting function wrapper

is.SimulationParams

Is x a SimulationParams object?

is.MutationParams

Is x a MutationParams object?

is.FamilyParams

Is x a FamilyParams object?

is.OutputParams

Is x a OutputParams object?

retrocombinator-package

retrocombinator: Simulating The Evolution of Retrotransposons Over Time

is.RecombParams

Is x a RecombParams object?

simulateEvolution

Run an entire simulation with flags

Is x a BurstParams object?

is.ActivityParams

Is x an ActivityParams object?

Is x a SeedParams object?

is.SelectionParams

Is x a SelectionParams object?