retrocombinator (version 1.0.0)

plotEvolution: Plotting function wrapper

Description

Plotting function wrapper

Usage

plotEvolution(data, type, ...)

Arguments

data

Simulation output data obtained from [retrocombinator::parseEvolutionOutput()()]

type

What should be plotted?

"initial"

Plot similarity to initial sequence over time.

"pairwise"

Plot the similarity between sequences over time.

"families"

Plot the evolution of families over time.

...

Any additional arguments to pass to specialised plotting functions (currently unused)

Value

A corresponding evolutionary history plot, based on the simulation of the evolution of retrotransposons

Examples

# NOT RUN {
plotEvolution(myData, "initial")
# }