Usage
occurrencelist_many(scientificname = NULL,
taxonconceptkey = NULL, dataproviderkey = NULL,
dataresourcekey = NULL, institutioncode = NULL,
collectioncode = NULL, catalognumber = NULL,
resourcenetworkkey = NULL, basisofrecordcode = NULL,
minlatitude = NULL, maxlatitude = NULL,
minlongitude = NULL, maxlongitude = NULL,
minaltitude = NULL, maxaltitude = NULL,
mindepth = NULL, maxdepth = NULL, cellid = NULL,
centicellid = NULL, typesonly = NULL,
georeferencedonly = NULL, coordinatestatus = NULL,
coordinateissues = NULL, hostisocountrycode = NULL,
originisocountrycode = NULL, originregioncode = NULL,
startdate = NULL, enddate = NULL, startyear = NULL,
endyear = NULL, year = NULL, month = NULL, day = NULL,
modifiedsince = NULL, startindex = NULL,
maxresults = 10, format = "brief", icon = NULL,
mode = NULL, stylesheet = NULL, removeZeros = FALSE,
writecsv = NULL, curl = getCurlHandle(),
fixnames = "none", parallel = FALSE, cores = 4)Arguments
scientificname
scientitic name of taxon
(character, see example)
taxonconceptkey
unique key for taxon (numeric)
dataproviderkey
Filter records to those provided
by the supplied numeric key for a data provider. See
providers. (character) dataresourcekey
Filter records to those provided
by the supplied numeric key for a data resource See
resources. (character) institutioncode
Return only records from a given
institution code.
collectioncode
Return only records from a given
collection code.
catalognumber
Return only records from a given
catalog number.
resourcenetworkkey
count only records which have
been made available by resources identified as belonging
to the network identified by the supplied numeric key.
basisofrecordcode
return only records with the
specified basis of record. Supported values are:
"specimen, observation, living, germplasm, fossil,
unknown". (character)
minlatitude
return only records from locations
with latitudes greater than the supplied value (southern
hemisphere with negative latitudes). (numeric)
maxlatitude
return only records from locations
with latitudes lower than the supplied value (southern
hemisphere with negative latitudes). (numeric)
minlongitude
return only records from locations
with longitudes greater than the supplied value (western
hemisphere with negative longitudes). (numeric)
maxlongitude
return only records from locations
with longitudes lower than the supplied value (western
hemisphere with negative longitudes). (numeric)
minaltitude
return only records from altitudes
greater than or equal to the supplied value. (integer)
maxaltitude
return only records from altitudes
less than or equals to the supplied value. (integer)
mindepth
return only records from depth greater
than or equal to the supplied value. (numeric 2 decimal
places)
maxdepth
return only records from depth less than
or equals to the supplied value. (numeric 2 decimal
places)
cellid
identifier for a one degree cell (O -
64,799)
centicellid
identifier for a 0.1 degree cell
within a one degree cell
typesonly
if set to "true", return only records
with a type status specified.
georeferencedonly
This option is deprecated.
coordinatestatus
if set to "true", return only
records with coordinates. If set to "false", return only
records without coordinates.
coordinateissues
if set to "true", return only
records for which the portal has detected possible issues
in georeferencing. If set to "false", return only records
for which the portal has not detected any such issues.
hostisocountrycode
return only records served by
providers from the country identified by the supplied
2-letter ISO code.
originisocountrycode
return only records of
occurrences which occurred within the country identified
by the supplied 2-letter ISO code.
originregioncode
return only records of
occurrences which occurred within the region identified
by the supplied 3-letter code.
startdate
return only records occurring on or
after the supplied date (format YYYY-MM-DD, e.g.
2006-11-28).
enddate
return only records occurring on or before
the supplied date (format YYYY-MM-DD, e.g. 2006-11-28).
startyear
return only records from during or after
the supplied year.
endyear
return only records from during or before
the supplied year.
year
return only records from during the supplied
year.
month
return only records from during the supplied
month (expressed as an integer in the range 1 to 12).
day
return only records from during the supplied
day of month (expressed as an integer in the range 1 to
31).
modifiedsince
return only records which have been
indexed or modified in the GBIF data portal index on or
after the supplied date (format YYYY-MM-DD, e.g.
2006-11-28).
startindex
return the subset of the matching
records that starts at the supplied (zero-based index).
maxresults
max number of results (integer)
(1-10000); defaults to 10
format
specifies the format in which the records
are to be returned,
icon
(only when format is set to kml) specified
the URL for an icon to be used for the KML Placemarks.
mode
Specifies whether the response data should
(as far as possible) be the raw values originally
retrieved from the data resource or processed
(normalised) values used within the data portal
(character)
stylesheet
Sets the URL of the stylesheet to be
associated with the
removeZeros
remove records with both Lat Long zero
values (logical)
writecsv
If path to a file is given, a text file
is written out and a success message is returned to the
console (logical)
curl
If using in a loop, call getCurlHandle()
first and pass the returned value in here (avoids
unnecessary footprint)
fixnames
One of "match","change","none", just keep
those records that match original search term, change all
names to the original search term (beware using this
option), or do nothing, respectively. Default is "none".
parallel
Do calls in parallel or not. (default is
FALSE)
cores
Number of cores to use in parallel call
option (only used if parallel=TRUE)