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rgbif (version 0.7.0)
Interface to the Global Biodiversity Information Facility API
Description
A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility.
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Install
install.packages('rgbif')
Monthly Downloads
6,643
Version
0.7.0
License
MIT + file LICENSE
Issues
26
Pull Requests
0
Stars
148
Forks
52
Repository
https://github.com/ropensci/rgbif
Maintainer
Scott Chamberlain
Last Published
July 31st, 2014
Functions in rgbif (0.7.0)
Search functions
occurrencecount
Counts taxon concept records matching a range of filters.
name_usage
Lookup details for specific names in all taxonomies in GBIF.
gbif_capwords
Capitalize the first letter of a character string.
gbifmap_list
Make a simple map to visualize GBIF point data.
gbif_bbox2wkt
Convert a bounding box to a Well Known Text polygon, and a WKT to a bounding box
densitylist
The density web service provides access to records showing the density of occurrence records from the GBIF Network by one-degree cell.
dataset_suggest
Suggest datasets in GBIF.
gbifparser
Parser for gbif data
check_wkt
Check input WKT
gbif_photos
View photos from GBIF.
is.gbiflist
Check if object is of class gbiflist
get_credentials
Get Github credentials from use in console
create_gist
Function that takes a list of files and creates payload for API
gbifmap_dens
Make a simple map to visualize GBIF data density data
print.gbifdens
Print summary of gbifdens class
nodes
Nodes metadata.
gbifmap
Make a map to visualize GBIF occurrence data.
occurrencelist
Occurrencelist searches for taxon concept records matching a range of filters.
is.gbifdens
Check if object is of class gbifdens
type_sum
Type summary
networks
Networks metadata.
rgbif-deprecated
Deprecated functions in rgbif
stylegeojson
Style a data.frame prior to converting to geojson.
gbifxmlToDataFrame
Code based on the `gbifxmlToDataFrame` function from dismo package (http://cran.r-project.org/web/packages/dismo/index.html), by Robert Hijmans, 2012-05-31, License: GPL v3
gbifdata
Get data.frame from occurrencelist, occurrencelist_many, or densitylist.
elevation
Get elevation for lat/long points from a data.frame or list of points.
providers
Get data providers and their unique keys.
dataset_search
Search datasets in GBIF.
gbifparser_verbatim
Parser for gbif data
ldfast
Replacement function for ldply that should be faster.
count_facet
Facetted count occurrence search.
parseresults
Parse results from call to occurrencelist endpoint
namelkupparser
Parser for name_usage endpoints, for fxns name_lookup and name_backbone
commas_to_periods
Convert commas to periods in lat/long data
taxonget
Get taxonomic information on a specific taxon or taxa in GBIF by their taxon concept keys.
parsenames
Parse taxon names using the GBIF name parser.
gist
Post a file as a Github gist
density_spplist
The density web service provides access to records showing the density of occurrence records from the GBIF Network by one-degree cell.
taxrank
Get the possible values to be used for (taxonomic) rank arguments in GBIF API methods.
occ_metadata
Search for catalog numbers, collection codes, collector names, and institution codes.
datasetparser
Parser for gbif data
occurrenceget
Get individual records for a given occurrence record.
blanktheme
Custom ggplot2 theme
occurrencedensity
Returns summary counts of occurrence records by one-degree cell for a single taxon, country, dataset, data publisher or data network.
isocodes
Table of country two character ISO codes, and GBIF names
occurrencelist_many
occurrencelist_many is the same as occurrencelist, but takes in a vector of species names.
dataset_metrics
Geta details on a dataset.
typestatus
Type status options for GBIF searching
occ_count
Get number of occurrence records.
name_backbone
Lookup names in the GBIF backbone taxonomy.
taxonsearch
Search for taxa in GBIF.
rgb_country_codes
Look up 2 character ISO country codes
is.gbiflist_na
Check if object is of class gbiflist_na
datasets
Search for datasets and dataset metadata.
name_lookup
Lookup names in all taxonomies in GBIF.
organizations
Organizations metadata.
suggestfields
Fields available in gbif_suggest function
resources
Get data resources and their unique keys.
occurrencelist_all
Occurrencelist_all carries out an occurrencelist query for a single name and all its name variants according to GBIF's name matching.
occ_get
Get data for specific GBIF occurrences.
print.gbiflist_na
Print summary of gbiflist_na class
togeojson
Convert spatial data files to GeoJSON from various formats.
name_suggest
A quick and simple autocomplete service that returns up to 20 name usages by doing prefix matching against the scientific name. Results are ordered by relevance.
print.gbiflist
Print summary of gbiflist class
occ_search
Search for GBIF occurrences.
rgbif
rgbif: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility.
installations
Installations metadata.
taxoncount
Search by taxon to retrieve number of records in GBIF.