rgbif (version 0.7.0)

occ_count: Get number of occurrence records.

Description

Get number of occurrence records.

Usage

occ_count(taxonKey = NULL, georeferenced = NULL, basisOfRecord = NULL,
  datasetKey = NULL, date = NULL, catalogNumber = NULL, country = NULL,
  hostCountry = NULL, year = NULL, from = 2000, to = 2012,
  type = "count", publishingCountry = "US", callopts = list(),
  nubKey = NULL, protocol = NULL)

Arguments

nubKey

Species key. PARAMETER NAME CHANGED TO taxonKey.

taxonKey

Species key

georeferenced

Return only occurence records with lat/long data (TRUE) or all records (FALSE, default).

basisOfRecord

Basis of record

datasetKey

Dataset key

date

Collection date

year

Year data were collected in

catalogNumber

Catalog number. PARAMETER GONE.

country

Country data was collected in, two letter abbreviation. See http://countrycode.org/ for abbreviations.

protocol

Protocol. E.g., 'DWC_ARCHIVE'

hostCountry

Country that hosted the data. PARAMETER GONE.

publishingCountry

Publishing country, two letter ISO country code

from

Year to start at

to

Year to end at

type

One of count (default), schema, basis_of_record, countries, or year.

callopts

Pass on options to httr::GET for more refined control of http calls, and error handling

Value

• A single numeric value, or a list of numerics.

References

http://www.gbif.org/developer/summary

Examples

occ_count(basisOfRecord='OBSERVATION')
occ_count(georeferenced=TRUE)
occ_count(country='DE')
occ_count(country='CA', georeferenced=TRUE, basisOfRecord='OBSERVATION')
occ_count(datasetKey='9e7ea106-0bf8-4087-bb61-dfe4f29e0f17')
occ_count(year=2012)
occ_count(taxonKey=2435099)
occ_count(taxonKey=2435099, georeferenced=TRUE)
occ_count(protocol='DWC_ARCHIVE')

# Just schema
occ_count(type='schema')

# Counts by basisOfRecord types
occ_count(type='basisOfRecord')

# Counts by countries. publishingCountry must be supplied (default to US)
occ_count(type='countries')

# Counts by year. from and to years have to be supplied, default to 2000 and 2012
occ_count(type='year', from=2000, to=2012)

# Counts by publishingCountry, must supply a country (default to US)
occ_count(type='publishingCountry')
occ_count(type='publishingCountry', country='BZ')