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rglobi (version 0.2.8)

R Interface to Global Biotic Interactions

Description

A programmatic interface to the web service methods provided by Global Biotic Interactions (GloBI). GloBI provides access to spatial-temporal species interaction records from sources all over the world. rglobi provides methods to search species interactions by location, interaction type, and taxonomic name. In addition, it supports Cypher, a graph query language, to allow for executing custom queries on the GloBI aggregate species interaction dataset.

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Install

install.packages('rglobi')

Monthly Downloads

224

Version

0.2.8

License

MIT + file LICENSE

Issues

6

Pull Requests

0

Stars

18

Forks

10

Maintainer

Jorrit Poelen

Last Published

May 13th, 2015

Functions in rglobi (0.2.8)

get_interactions_by_taxa

Return interactions involving specific taxa
get_data_fields

List data fields identified in GloBI database
get_interactions

Get Species Interaction from GloBI
query

Executes a Cypher Query Against GloBI's Neo4j Instance
get_interaction_matrix

Get Interaction Matrix. Constructs an interaction matrix indicating whether source taxa (rows) or target taxa (columns) are known to interact with given type.
get_prey_of

Get a List of Prey for given Predator Taxon
get_child_taxa

Returns all known child taxa with known interaction of specified taxa and rank.
get_interactions_in_area

Return all interactions in specified area
get_interaction_table

Returns all known child taxa with known interaction of specified source and target taxa on any rank.
get_interaction_types

List interactions identified in GloBI database
get_predators_of

Get a List of Predators of a Given Prey Taxon
get_interaction_areas

Find locations at which interactions were observed