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rnaseqcomp (version 1.2.2)

Benchmarks for RNA-seq Quantification Pipelines

Description

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with nessasery meta information should be organizd into numeric matrices in order to proceed the evaluation.

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Version

Version

1.2.2

License

GPL-3

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Maintainer

Mingxiang Teng

Last Published

February 15th, 2017

Functions in rnaseqcomp (1.2.2)

rnaseqcomp-class

rnaseqcomp
plotROC

Estimate And Plot Differential Expression
plot2TX

Estimate And Plot Transcript Proportion Difference
simdata

Example of Quantifications on Simulation Data
plotFC

Estimate And Plot Fold Change Accuracy
check_rnaseqcomp

Sanity Check of S4 rnaseqcomp class
signalCalibrate

Quantification Filtering And Calibration
plotSD

Estimate And Plot Median Standard Deviation
plotNE

Estimate And Plot Express And Non-express Features