simdata

This dataset include quantifications on 15776 transcripts on
two cell lines each with 8 replicates. The true differential
expressed transcripts were simulated. Quantifications from
two pipelines (RSEM and FluxCapacitor) are included in this
dataset at <code>simdata$quant</code>. Meta information of transcripts
is included at <code>simdata$meta</code>, inlcuding if they belongs
to house keeping genes and their true fold change status.
Sample information is included at <code>simdata$samp</code>.

Several quantitative and visualized benchmarks
    for RNA-seq quantification pipelines. Two-condition
    quantifications for genes, transcripts, junctions or
    exons by each pipeline with nessasery meta information
    should be organizd into numeric matrices in order to
    proceed the evaluation.

Mingxiang Teng

rnaseqcomp

Benchmarks for RNA-seq Quantification Pipelines

simdata function

A list of objects including list of two 15776*16
quantification matrices, one 15776*6 data frame with meta
information and one 16*3 data frame with sample information.

simdata: Example of Quantifications on Simulation Data

Description

Arguments

format