fixStartStop.feat

An object of type <code>feat</code>.  CDS regions must be present with type
"CDS", and the transcript_id must be indicated in the attribute field.
Start and stop codons should have feature type "start_codon" and "stop_codon"
(as produced by addSignals.fea

features

RPHAST is an R interface to the PHAST pacakge
        (Phylogenetic Analyis with Space/Time Models).  It can be used
        for many types of analysis in comparative and evolutionary
        genomics, such as estimating models of evolution from sequence
        data, scoring alignments for conservation or acceleration, and
        predicting elements based on conservation or custom
        phylogenetic hidden Markov models.  It can also perform many
        basic operations on multiple sequence alignments and
        phylogenetic trees.

fixStartStop.feat: Fix start and stop signals...

Description

Usage

Arguments

Value