RPHAST: R interface to PHAST
Description
RPHAST is an R interface to the PHAST pacakge
(Phylogenetic Analyis with Space/Time Models). It can be used
for many types of analysis in comparative and evolutionary
genomics, such as estimating models of evolution from sequence
data, scoring alignments for conservation or acceleration, and
predicting elements based on conservation or custom
phylogenetic hidden Markov models. It can also perform many
basic operations on multiple sequence alignments and
phylogenetic trees.