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sRAP (version 1.12.0)

Simplified RNA-Seq Analysis Pipeline

Description

This package provides a pipeline for gene expression analysis (primarily for RNA-Seq data). The normalization function is specific for RNA-Seq analysis, but all other functions (Quality Control Figures, Differential Expression and Visualization, and Functional Enrichment via BD-Func) will work with any type of gene expression data.

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Version

Version

1.12.0

License

GPL-3

Maintainer

Charles Warden

Last Published

February 15th, 2017

Functions in sRAP (1.12.0)

RNA.norm

Normalization for RNA-Seq Data
bdfunc.enrichment.human

BD-Func Enrichment File for Human Gene Symbols
RNA.bdfunc.signal

Functional Enrichment for a Table of Normalized Gene Expression Values
bdfunc.enrichment.mouse

BD-Func Enrichment File for Mouse Gene Symbols
RNA.deg

Differential Expression Statistics
RNA.qc

Gene Expression Quality Control Statistics
RNA.bdfunc.fc

Functional Enrichment for a Table of Fold-Change Values
RNA.prepare.input

Prepare sRAP InputFile