bdfunc.enrichment.human


Contains genes lists of paired up-regulated and down-regulated genes.  Gene Lists come from Gene Ontology (GO [1]) and MSigDB [2].<p></p><p>BD-Func [3] will compare the expression patterns for the up-regulated genes to the down-regulated genes.
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datasets

This package provides a pipeline for gene expression analysis (primarily for RNA-Seq data).  The normalization function is specific for RNA-Seq analysis, but all other functions (Quality Control Figures, Differential Expression and Visualization, and Functional Enrichment via BD-Func) will work with any type of gene expression data.

Charles Warden

sRAP

Simplified RNA-Seq Analysis Pipeline

bdfunc.enrichment.human function

GO Gene Lists: http://www.geneontology.org/GO.downloads.annotations.shtml
MSigDB Gene Lists: http://www.broadinstitute.org/gsea/downloads.jsp

Source

Contains genes lists of paired up-regulated and down-regulated genes.  Gene Lists come from Gene Ontology (GO [1]) and MSigDB [2].

BD-Func [3] will compare the expression patterns for the up-regulated genes to the down-regulated genes.

bdfunc.enrichment.human: BD-Func Enrichment File for Human Gene Symbols

Description

Usage

Arguments

Source

References