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samr (version 2.0)
SAM: Significance Analysis of Microarrays
Description
Significance Analysis of Microarrays
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Install
install.packages('samr')
Monthly Downloads
699
Version
2.0
License
LGPL
Maintainer
Rob Tibshirani
Last Published
June 29th, 2011
Functions in samr (2.0)
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samr.missrate
Estimate the miss rate table for a SAM analysis
samr.pvalues.from.perms
Report estimated p-values for each gene, from a SAM analysis
samr.compute.siggenes.table
Compute significant genes table
samr.assess.samplesize.plot
Make a plot of the results from samr.assess.samplesize
samr.norm.data
output normalized sequencing data
SAMseq
Significance analysis of sequencing data - simple user interface
samr.plot
Make Q-Q plot for SAM analysis
SAM
Significance analysis of microarrays - simple user interface
samr.assess.samplesize
Assess the sample size for a SAM analysis
samr.estimate.depth
estimate the sequencing depth
samr.compute.delta.table
Compute delta table for SAM analysis
samr-internal
Internal samr functions
samr.tail.strength
Estimate tail strength for a dataset, from a SAM analysis
samr
Significance analysis of microarrays