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samr (version 2.0)

SAM: Significance Analysis of Microarrays

Description

Significance Analysis of Microarrays

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Version

Install

install.packages('samr')

Monthly Downloads

737

Version

2.0

License

LGPL

Maintainer

Rob Tibshirani

Last Published

June 29th, 2011

Functions in samr (2.0)

samr.missrate

Estimate the miss rate table for a SAM analysis
samr.pvalues.from.perms

Report estimated p-values for each gene, from a SAM analysis
samr.compute.siggenes.table

Compute significant genes table
samr.assess.samplesize.plot

Make a plot of the results from samr.assess.samplesize
samr.norm.data

output normalized sequencing data
SAMseq

Significance analysis of sequencing data - simple user interface
samr.plot

Make Q-Q plot for SAM analysis
SAM

Significance analysis of microarrays - simple user interface
samr.assess.samplesize

Assess the sample size for a SAM analysis
samr.estimate.depth

estimate the sequencing depth
samr.compute.delta.table

Compute delta table for SAM analysis
samr-internal

Internal samr functions
samr.tail.strength

Estimate tail strength for a dataset, from a SAM analysis
samr

Significance analysis of microarrays