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scSorter (version 0.0.2)

Implementation of 'scSorter' Algorithm

Description

Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.

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Version

Install

install.packages('scSorter')

Monthly Downloads

205

Version

0.0.2

License

GPL-3

Maintainer

Jun Li

Last Published

March 17th, 2021

Functions in scSorter (0.0.2)

update_func

Update Function
scSorter

scSorter
xfindvariable_genes

Select Highly Variable Genes
xnormalize_scData

Normalize scRNA-seq Data
data_preprocess

Preprocess Data
cost_func

Cost Function
update_C

Update Cluster
update_mu

Mu Update
design_matrix_builder

Design Matrix Builder