xfindvariable_genes

A matrix of input scRNA-seq data. Rows correspond to genes and columns correpond to cells.

expr

The number of most variable genes to be selected.

ngenes

Select Highly Variable Genes following the vst approach. Please only use this function when you do not have access to Seurat package. More details are available in the vignette of this package.

Implements the algorithm described in
Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes".
Cluster cells to known cell types based on marker genes specified for each cell type.

xfindvariable_genes: Select Highly Variable Genes

Description

Usage

Arguments

Value