<p>Deconvolved cell-type proportions from STdeconvolve for a Spatial Transcriptomic dataset of the mouse olfactory bulb along with the positions of their respective spots</p>

datasets

Provides a powerful and flexible tool for visualizing proportional data across spatially resolved contexts. By combining the concepts of scatter plots and stacked bar charts, 'scatterbar' allows users to create scattered bar chart plots, which effectively display the proportions of different categories at each (x, y) location. This visualization is particularly useful for applications where understanding the distribution of categories across spatial coordinates is essential. This package features automatic determination of optimal scaling factors based on data, customizable scaling and padding options for both x and y axes, flexibility to specify custom colors for each category, options to customize the legend title, and integration with 'ggplot2' for robust and high-quality visualizations. For more details, see Velazquez et al. (2024) <doi:10.1101/2024.08.14.606810>.

Dee Velazquez

scatterbar

Scattered Stacked Bar Chart Plots

Jean Fan

mOB function

<p>A list of 2 objects, each of 260 rows and 2 columns: data, which contains the 8 deconvolved cell-types proportions for each 260 spots/pixels in a spatial transcriptomics experiment performed on mouse olfactory bulb tissue and xy, which contains the x and y-coordinates for each 260 spots/pixels on a mouse olfactory bulb tissue slide.</p>

Format

Deconvolved cell-type proportions from STdeconvolve for a Spatial Transcriptomic dataset of the mouse olfactory bulb along with the positions of their respective spots — mOB

Deconvolved cell-type proportions from STdeconvolve for a Spatial Transcriptomic dataset of the mouse olfactory bulb along with the positions of their respective spots

mOB: Deconvolved cell-type proportions from STdeconvolve for a Spatial Transcriptomic dataset of the mouse olfactory bulb along with the positions of their respective spots

Description

Usage

Arguments

Format