scopr v0.3.3

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Read Ethoscope Data

Handling of behavioural data from the Ethoscope platform (Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) <DOI:10.1371/journal.pbio.2003026>). Ethoscopes (<http://gilestrolab.github.io/ethoscope/>) are an open source/open hardware framework made of interconnected raspberry pis (<https://www.raspberrypi.org>) designed to quantify the behaviour of multiple small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables such as xy coordinates, dimensions and speed. This package is part of the rethomics framework <http://rethomics.github.io/>.

Readme

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scopr is part of the rethomics framework. This README is a short explanation of the basics of scopr. A comprehensive tutorial is available on the rethomics webpage. We also provide a conventional pdf documentation.

Installation

library(devtools)
install_github("rethomics/scopr")

Functions in scopr

Name Description
link_ethoscope_metadata_remote Link ethoscope metadata to the matching result files
no_region_id_metadata Simple toy metadata defining three experiments, with one condition (test) per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.
region_id_metadata Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition (test) is linked to the experiments, and another condition (treatment) is per individual. It serves as a simple example. #'
list_result_files List all available result files
scopr_example Get path to scopr example
load_ethoscope Load data from ethoscope result files
experiment_info Retrieve information about an experiment
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Details

Date 2019-02-14
License GPL-3
Encoding UTF-8
LazyData true
URL https://github.com/rethomics/scopr
BugReports https://github.com/rethomics/scopr/issues
RoxygenNote 6.1.1
NeedsCompilation no
Packaged 2019-02-15 00:12:39 UTC; quentin
Repository CRAN
Date/Publication 2019-02-15 15:20:03 UTC

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