scopr v0.3.3
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Read Ethoscope Data
Handling of behavioural data from the Ethoscope platform
(Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) <DOI:10.1371/journal.pbio.2003026>).
Ethoscopes (<http://gilestrolab.github.io/ethoscope/>) are an open source/open hardware framework made of
interconnected raspberry pis (<https://www.raspberrypi.org>) designed to quantify the behaviour of multiple
small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables
such as xy coordinates, dimensions and speed.
This package is part of the rethomics framework <http://rethomics.github.io/>.
Readme
scopr
scopr is part of the rethomics framework.
This README is a short explanation of the basics of scopr.
A comprehensive tutorial is available on the rethomics webpage.
We also provide a conventional pdf documentation.
Installation
library(devtools)
install_github("rethomics/scopr")
Functions in scopr
| Name | Description | |
| link_ethoscope_metadata_remote | Link ethoscope metadata to the matching result files | |
| no_region_id_metadata | Simple toy metadata defining three experiments, with one condition (test) per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example. | |
| region_id_metadata | Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition (test) is linked to the experiments, and another condition (treatment) is per individual. It serves as a simple example. #' | |
| list_result_files | List all available result files | |
| scopr_example | Get path to scopr example | |
| load_ethoscope | Load data from ethoscope result files | |
| experiment_info | Retrieve information about an experiment | |
| No Results! | ||
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Details
| Date | 2019-02-14 |
| License | GPL-3 |
| Encoding | UTF-8 |
| LazyData | true |
| URL | https://github.com/rethomics/scopr |
| BugReports | https://github.com/rethomics/scopr/issues |
| RoxygenNote | 6.1.1 |
| NeedsCompilation | no |
| Packaged | 2019-02-15 00:12:39 UTC; quentin |
| Repository | CRAN |
| Date/Publication | 2019-02-15 15:20:03 UTC |
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