Learn R Programming

sdef (version 1.7)

Synthesizing List of Differentially Expressed Features

Description

Performs two tests to evaluate if the experiments are associated and returns a list of interesting features common to all the experiments.

Copy Link

Version

Install

install.packages('sdef')

Monthly Downloads

28

Version

1.7

License

GPL-2

Maintainer

Alberto Cassese

Last Published

May 17th, 2018

Functions in sdef (1.7)

Tmc

Empirical null distribution of max T(h)
Example3Lists

Molecular Differences between Mammalian Sexes.
Liver.Muscle

Diabetes susceptibility in liver and skeletal muscle of mice.
simulation

Simulate p-values for two related experiments
sdef-package

sdef
designMatrix

Internal function
extractFeatures.T

Extracting the lists of features of interest
ratio

Ratio Th between the observed features in common and the expected ones
extractFeatures.R

Extracting the lists of features of interest
simulation.indep

Simulate p-values for two indipendent experiments
designCount

Internal function
baymod

Bayesian model for the ratio of observed to expected probability of features to be in common
createTable

Function to create an output table