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searchAnalyzeR

searchAnalyzeR provides comprehensive analytics, reporting, and testing capabilities for systematic review search strategies. The package helps researchers optimize their search strategies, evaluate performance against gold standards, and generate PRISMA-compliant reports.

Key Features

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Version

Install

install.packages('searchAnalyzeR')

Version

0.1.0

License

GPL-3

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/chaoliu-cl/searchAnalyzeR

Maintainer

Chao Liu Liu

Last Published

August 28th, 2025

Functions in searchAnalyzeR (0.1.0)

bootstrap_compare

Bootstrap Comparison of Search Strategies

auto_detect_columns

Auto-detect Column Mappings

ReproducibilityManager

Search Reproducibility Manager

Search Strategy Analytics Engine

PRISMA-Compliant Report Generator

calc_temporal_coverage

Calculate Temporal Coverage Metrics

calc_search_stats

Calculate Search Result Statistics

Calculate Cosine Similarity

Calculate Coverage Metrics Across Databases

Calculate Term Effectiveness Score

Calculate Jaccard Similarity

calc_efficiency

Calculate Search Efficiency Metrics

calc_sample_size

Power Analysis for Search Strategy Evaluation

calc_strategy_comparison

Calculate Strategy Comparison Metrics

calc_precision_recall

Calculate Precision and Recall Metrics

complete_search_workflow

Complete Search and Analysis Workflow

create_analysis_template

Create Analysis Template Script

Calculate Text Similarity

Process Large Dataset in Chunks

Clean Text Fields

compare_strategies

Benchmark Testing Framework for Search Strategies

create_progress_bar

Create Progress Bar for Long Operations

create_data_package

Create Data Package for Sharing

Create Summary Statistics Table

detect_doi_dupes

Detect DOI-based Duplicates

Detect and Remove Duplicate Records

Utility Functions for searchAnalyzeR Package

create_package_manifest

Create Package Manifest

create_strategy

Create Default Search Strategy Template

clean_col_names

Clean Column Names

create_data_dictionary

Create Data Dictionary

Compare Terms Across Strategies

Export Analysis Metrics

Export to CSV Format

Cross-Validation Framework for Search Strategies

Create PRISMA Flow Diagram with Proper Spacing and Text Enclosure

detect_fuzzy_dupes

Detect Fuzzy Duplicates

export_metrics_csv

Export Metrics to CSV

create_package_readme

Create Package README

detect_exact_dupes

Detect Exact Duplicates

export_validation_json

Export Validation Results to JSON

export_metrics_json

Export Metrics to JSON

export_validation_xlsx

Export Validation Results to Excel

export_validation_csv

Export Validation Results to CSV

Export to RIS Format

Export to Excel Format with Multiple Sheets

export_to_endnote

Export to EndNote Format

Export Utilities for Search Analysis Results

export_to_bibtex

Export to BibTeX Format

Format Numbers for Display

export_metrics_xlsx

Export Metrics to Excel

export_validation

Export Validation Results

Memory-Efficient Data Frame

plot_keyword_eff

Create Keyword Effectiveness Analysis Plot

Check if Object is Empty

get_pkg_versions

Extract Package Version Information

Find Top Performing Terms

extract_screening

Extract Screening Data Structure

Visualization Functions for Search Strategy Analysis

Get Current Memory Usage

Merge Search Results from Multiple Sources

Meta-Analysis of Benchmark Results

plot_db_performance

Create Database Performance Comparison

Generate Reproducible Random Seed

plot_sensitivity

Create Sensitivity Analysis Heatmap

Clean up Search Analysis Objects to Free Memory

Monitor Memory Usage During Function Execution

print.term_effectiveness

Print Method for term_effectiveness Objects

print.term_comparison

Print Method for Term Comparison

Create Temporal Coverage Plot

Create Precision-Recall Curve

Search PubMed and Retrieve Articles

Rename Columns Based on Mapping

safe_list_to_df

Convert List to Data Frame Safely

Benchmark Suite Execution

Safe Division Function

std_generic_results

Standardize Generic Results

search_multiple_databases

Search Multiple Databases

simulate_pubmed_results

Generate Simulated PubMed Results

plot_term_effectiveness

Plot Term Effectiveness Results

std_pubmed_results

Standardize PubMed Results

std_cochrane_results

Standardize Cochrane Results

std_embase_results

Standardize Embase Results

Stream Process Large Files

standardize_date

Standardize Date Formats

simulate_search_execution

Simulate Search Strategy Execution

validate_strategy

Validate Search Strategy Object

std_scopus_results

Standardize Scopus Results

term_effectiveness

Analyze Term Effectiveness in Search Results

std_search_results

Standardize Search Results Format

std_wos_results

Standardize Web of Science Results

validate_date_range

Validate Date Range

PubMedConnector

PubMed Database Connector

Calculate Confidence Intervals

BenchmarkValidator

Benchmark Validation System

Create a Temporary Analysis Environment

Manage Search Results Cache