searchAnalyzeR (version 0.1.0)

complete_search_workflow: Complete Search and Analysis Workflow

Description

Perform a complete workflow: search databases, analyze results, generate reports.

Usage

complete_search_workflow(
  search_terms,
  databases = "pubmed",
  gold_standard = NULL,
  max_results = 100,
  date_range = NULL,
  output_dir = NULL
)

Value

List containing search results, analysis, and report paths

Arguments

search_terms

Character vector of search terms

databases

Vector of databases to search

gold_standard

Optional vector of known relevant article IDs

max_results

Maximum results to retrieve

date_range

Optional date range for search

output_dir

Directory for reports (uses tempdir() by default)

Examples

# \donttest{
# Complete workflow
results <- complete_search_workflow(
  search_terms = "diabetes treatment clinical trial",
  databases = "pubmed",
  max_results = 50,
  date_range = c("2022/01/01", "2023/12/31")
)

# View summary
print(results$summary)

# Access detailed metrics
print(results$analysis$metrics)
# }