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seedCCA (version 3.1)

Seeded Canonical Correlation Analysis

Description

Functions for dimension reduction through the seeded canonical correlation analysis are provided. A classical canonical correlation analysis (CCA) is one of useful statistical methods in multivariate data analysis, but it is limited in use due to the matrix inversion for large p small n data. To overcome this, a seeded CCA has been proposed in Im, Gang and Yoo (2015) \doi{10.1002/cem.2691}. The seeded CCA is a two-step procedure. The sets of variables are initially reduced by successively projecting cov(X,Y) or cov(Y,X) onto cov(X) and cov(Y), respectively, without loss of information on canonical correlation analysis, following Cook, Li and Chiaromonte (2007) \doi{10.1093/biomet/asm038} and Lee and Yoo (2014) \doi{10.1111/anzs.12057}. Then, the canonical correlation is finalized with the initially-reduced two sets of variables.

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Version

Install

install.packages('seedCCA')

Monthly Downloads

278

Version

3.1

License

GPL (>= 2.0)

Maintainer

Jae Yoo

Last Published

June 9th, 2022

Functions in seedCCA (3.1)

seedCCA

Seeded Canonical correlation analysis
seeding.auto.stop

increments of iterative projections with automatic stopping
nutrimouse

Nutrimouse dataset
seedols

Ordinary least squares
seeding

increments of iterative projections
selectu

Function that guides a selection of the terminating index when using seedCCA function
seedpls

Partial least squares through iterative projections
covplot

scree-ploting cov(X, Y)
print.seedCCA

basic function for printing class "seedCCA"
coef.seedCCA

Coefficients of ordinary and partial least squares through iterative projections
cookie

cookie dataset
iniCCA

Initialized CCA in seeded CCA
Pm

Projection of a seed matrix on to the column subspace of M with respect to Sx inner-product
plot.seedCCA

Plotting class "seedCCA" depending on the value of type
finalCCA

finalized CCA in seeded CCA
fitted.seedCCA

Fitted values of ordinary and partial least squares