seqinr (version 1.0-1)

gb2fasta: conversion of GenBank file into fasta file

Description

Converts a single entry in GenBank format into a fasta file.

Usage

gb2fasta(source.file =
"ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Agrobacterium_tumefaciens_C58_Cereon/NC_003065.gbk",
destination.file = "Agrobacterium_tumefaciens_C58_Cereon.fasta")

Arguments

source.file

GenBank file

destination.file

Fasta file

Value

• none

Details

Multiple entries in GenBank file are not supported.

References

� To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

See Also

oriloc

Examples

gb2fasta()