To Plot Subsequences on the Parent Sequence
Generic Function to obtain annotation for a sequence
Converts amino-acid three-letter code into the one-letter one
Vectors of coefficients to compute linear forms.
conversion of a vector of chars into a string
invers
To see what's inside the package seqinr
Class for DNA sequence in Fasta Format
Get the exponential growth of nucleic acid database content
Sequence coming from an ACNUC data bases located on the web
to Get an Estimation of Ka and Ks
To Compute the Theoretical Isoelectric Point
Calculates the fractional GC2 content of nucleic acid sequences
simple numerical encoding of a DNA sequence.
Class for sub-sequences
To Get Some Protein Statistics
Distribution of bacterial genome size from GOLD
Composition of dimer/trimer/etc nucleotides
Calculates the fractional GC3 content of nucleic acid sequences
AA sequence in Fasta Format
to plot genetic code as in textbooks
function to convert the numeric encoding of a DNA sequence
into a vector of characters
To select a database structured under ACNUC and located on the web
Prediction of origin and terminus of replication in bacteria
999 coding sequences from E. coli
Read file in fasta format
conversion of GenBank file into fasta file
Generic Function to translate a sequence
Generic Function To obtain the length of a sequence
Converts amino-acid one-letter code into the three-letter one
To Get Sequence Type
Create codon usage table
Positions of possibly degenerated motifs within sequences
Pairwise Distances from Aligned Protein or DNA/RNA Sequences
Generic Function To Get a sequence
Translate nucleic acid sequences
Generic Function to get keyword(s) associated to a sequence
Cleveland plot for codon usage tables
To get all words from an alphabet.
Base composition in ssDNA for 7 bacterial DNA
Generic Function To obtain the name of a sequence
split a sequence into sub-sequences
utility data for seqinr
complement a nucleic sequence
Read file in mase, clustal, phylip, fasta or msf format
Conversion of a GenBank format file into a glimmer-like one
conversion of a string into a vector of chars
Bacterial complete genome data from ncbi ftp site
Calculates the fractional GC content of nucleic acid sequences
Generic Function to obtain a fragment of a sequence
Generic Function To obtain the Position of a Sequence on the Parent Sequence
To get a list of sequence names from an ACNUC data base located on the web
To close a remote ACNUC database
Mean zscore on 242 complete bacterial chromosomes
Aerobic cost of amino-acids in Escherichia coli and G+C classes
Dot Plot Comparison of two sequences
Expected numeric results for Ka and Ks computation
Zscore on three strains of Prochlorococcus marinus
Random synonymous coding sequence generation
Generic Functions to obtain annotation, fragment, associated
keyword(s), length, location, name, sequence, or translation for a
sequence
Statistical over- and under- representation of dinucleotides in a
sequence
Sequence permutation according to several different models
Weight of each synonymous codon
Calculates the fractional G+C content of nucleic acid sequences
Protein Molecular Weight
Reverse alignment - from protein sequence alignment to nucleic sequence alignment
A toy example of amino-acid counts in three proteins
A toy example of codon counts in three coding sequences
To create on server a bitlist from data lines sent by client
Synonymous codons
Write file in fasta format
Biological Sequences Retrieval and Analysis
List of 544 physicochemical and biological properties for the 20 amino-acids