seqinr (version 1.0-1)

gbk2g2: Conversion of a GenBank format file into a glimmer-like one

Description

This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output.

Usage

gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/logiciel/oriloc/ct.gbk",
g2.coord = "g2.coord")

Arguments

gbkfile

The name of the GenBank file

g2.coord

The name of the glimmer-like file

Value

Details

Partial CDS (either 5' or 3') and join in features are discarded.

References

� To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

See Also

oriloc

Examples

gbk2g2()

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