To Get Sequence Type
Calculates the fractional G+C content of nucleic acid sequences
Expected numeric results for Ka and Ks computation
To create on server a bitlist from data lines sent by client
Codon usage indices
split a sequence into sub-sequences
Class for DNA sequence in Fasta Format
To Compute the Theoretical Isoelectric Point
Bacterial complete genome data from ncbi ftp site
To Plot Subsequences on the Parent Sequence
simple numerical encoding of a DNA sequence.
Sequence coming from an ACNUC data bases located on the web
Prediction of origin and terminus of replication in bacteria
Composition of dimer/trimer/etc nucleotides
conversion of a vector of chars into a string
Biological Sequences Retrieval and Analysis
Dot Plot Comparison of two sequences
Weight of each synonymous codon
Vectors of coefficients to compute linear forms.
Cleveland plot for codon usage tables
complements a nucleic acid sequence
To Get Some Protein Statistics
Pairwise Distances from Aligned Protein or DNA/RNA Sequences
Converts amino-acid three-letter code into the one-letter one
Get the exponential growth of nucleic acid database content
Random synonymous coding sequence generation
read FASTA formatted files
Converts amino-acid one-letter code into the three-letter one
AA sequence in Fasta Format
Protein Molecular Weight
conversion of GenBank file into fasta file
List of 544 physicochemical and biological properties for the 20 amino-acids
999 coding sequences from E. coli
Class for sub-sequences
Synonymous codons
conversion of a string into a vector of chars
To select a database structured under ACNUC and located on the web
Write file in fasta format
to plot genetic code as in textbooks
To close a remote ACNUC database
Generic Functions to obtain annotation, fragment, associated
keyword(s), length, location, name, sequence, or translation for a
sequence
Zscore on three strains of Prochlorococcus marinus
Statistical over- and under- representation of dinucleotides in a
sequence
invers
Positions of possibly degenerated motifs within sequences
to Get an Estimation of Ka and Ks
To get a list of sequence names from an ACNUC data base located on the web
Conversion of a GenBank format file into a glimmer-like one
Reverse alignment - from protein sequence alignment to nucleic sequence alignment
A toy example of amino-acid counts in three proteins
Sequence permutation according to several different models
function to convert the numeric encoding of a DNA sequence
into a vector of characters
Base composition in ssDNA for 7 bacterial DNA
A toy example of codon counts in three coding sequences
Read aligned sequence files in mase, clustal, phylip, fasta or msf format
Translate nucleic acid sequences
Aerobic cost of amino-acids in Escherichia coli and G+C classes
utility data for seqinr
Mean zscore on 242 complete bacterial chromosomes
Distribution of bacterial genome size from GOLD
To get all words from an alphabet.
To see what's inside the package seqinr