seqinr (version 1.0-6)

gbk2g2: Conversion of a GenBank format file into a glimmer-like one

Description

This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output.

Usage

gbk2g2(gbkfile = "ftp://pbil.univ-lyon1.fr/pub/logiciel/oriloc/ct.gbk",
g2.coord = "g2.coord")

Arguments

gbkfile

The name of the GenBank file

g2.coord

The name of the glimmer-like file

Value

Details

Partial CDS (either 5' or 3') and join in features are discarded.

References

citation("seqinr")

See Also

oriloc

Examples

gbk2g2()