Expected numeric results for Ka and Ks computation
Forensic Genetic Profile Allelic Ladder Raw Data
utility data for seqinr
To Get Some Protein Statistics
Forensic Genetic Profile Raw Data
Calculates the fractional G+C content of nucleic acid sequences.
Sequence coming from a remote ACNUC data base
Vectors of coefficients to compute linear forms.
AA sequence in Fasta Format
Class for DNA sequence in Fasta Format
Class for sub-sequences
Converts amino-acid one-letter code into the three-letter one
Converts amino-acid three-letter code into the one-letter one
Aerobic cost of amino-acids in Escherichia coli and G+C classes
Computing an IUPAC nucleotide symbol
Estimation of baseline value
Constructor for class alignment
To Convert a forensic microsatellite allele name into its length in base pairs
as.matrix.alignment
conversion of a vector of chars into a string
Returns a socket to the last opened database
To get the count of existing lists and all their ranks on server
Expansion of IUPAC nucleotide symbols
complements a nucleic acid sequence
Codon Adaptation Index (CAI) w tables
Base composition in ssDNA for 7 bacterial DNA
Codon Adaptation Index
To use a standard color with an alpha transparency chanel
List of 544 physicochemical and biological properties for the 20 amino-acids
To close a remote ACNUC database
Example of results obtained after a call to read.alignment
Number of subsequences in an ACNUC list
open and close a remote access to an ACNUC database
Cleveland plot for codon usage tables
Draws a circle
Composition of dimer/trimer/etc oligomers
To select a database structured under ACNUC and located on the web
Graphical representation for nucleotide skews in
prokaryotic chromosomes.
999 coding sequences from E. coli
Extraction of breakpoint positions on the
rearranged nucleotide skews.
To Compute the Theoretical Isoelectric Point
The number of free lists available and annotation lines in an ACNUC server
Fast Allele in Common Count
Distribution of bacterial genome size from GOLD
Conversion of GenBank file into fasta file
Example of results obtained after a call to read.alignment
Mean zscore on 242 complete bacterial chromosomes
To extract the sequences information of a sequence or a list of sequence in different formats
Consensus and profiles for sequence alignments
Generic function to get the length of sequences
Generic Function to get sequence annotations
Get the exponential growth of nucleic acid database content
Pairwise Distances from Aligned Protein or DNA/RNA Sequences
To get the rank of a list from its name
Generic function to get the location of subsequences on the parent sequence
Asks for information about an ACNUC list of specified rank
Generic function to extract sequence fragments
Generic function to get keywords associated to sequences
GC content and aerobiosis in bacteria
Extract sequence identified by name or by number from an ACNUC server
GC content and temperature in bacteria
Get help from an ACNUC server
Dot Plot Comparison of two sequences
Ka and Ks, also known as dn and ds, computation
To create on server an ACNUC list from data lines sent by client
To get available subsequence types in an opened ACNUC database
Get the ACNUC number of a sequence from its name or accession number
Generic function to translate coding sequences into proteins
Expected numeric results for Ka and Ks in extreme cases
Graphical representation for rearranged nucleotide skews in
prokaryotic chromosomes.
Description of databases known by an ACNUC server
Rename an R object
Extraction of Peak locations, Heights and Surfaces from ABIF data
Graphical representation of a recstat analysis.
Conversion of a GenBank format file into a glimmer-like one
Conversion of a GenBank format file into a glimmer-like
one. Eukaryotic version.
GS500LIZ size standards
Identifiler allele names
Sequence permutation according to several different models
Electrophoregram plot for ABIF data
Prediction of origin and terminus of replication in bacteria.
Representation of Amplicon Size Ranges of a STR kit.
Generic function to get sequence data
Generic function to get the names of sequences
function to convert the numeric encoding of a DNA sequence
into a vector of characters
Simple plot of an allelic ladder from ABIF data
Example of results obtained after a call to read.alignment
Protein Molecular Weight
Fragment of the E. coli chromosome
To see what's inside the package seqinr
pK values for the side chain of charged amino acids from various sources
Utility function to parse answers from an ACNUC server
read FASTA formatted files
Select annotation lines in an ACNUC database
Low level function to get the record count of the specified ACNUC
index file
Zscore on three strains of Prochlorococcus marinus
To get a list of sequence names from an ACNUC data base located on the web
Biological Sequences Retrieval and Analysis
Import GenMapper Panels configuration file
Three aligned nucleic acid sequences
Example of results obtained after a call to read.alignment
Example of results obtained after a call to read.alignment
Text representation of a sequence from an ACNUC server
Modification of an ACNUC list
Read ABIF formatted files
Reverse alignment - from protein sequence alignment to nucleic sequence alignment
Read aligned sequence files in mase, clustal, phylip, fasta or msf format
Import GenMapper Bins configuration file
split a sequence into sub-sequences
Total number of residues in an ACNUC list
To Plot Subsequences on the Parent Sequence
Ergheaf gur EBG-13 pvcurevat bs n fgevat
Prediction of Coding DNA Sequences.
Utility function to escape LaTeX special characters present in a string
Print method for objects from class qaw
Sets the name of an ACNUC list identified by its rank
Tests if regions located between Stop codons contain putative CDSs.
conversion of a string into a vector of chars
to plot genetic code as in textbooks
Stutter ratio estimation
Tests if regions located between Stop codons contain putative CDSs.
Print method for objects from class SeqAcnucWeb
Save sequence names or accession numbers into a file
Detection of replication-associated effects on base composition asymmetry in
prokaryotic chromosomes.
simple numerical encoding of a DNA sequence.
A toy example of amino-acid counts in three proteins
Trim leading and/or trailing spaces in strings
Low level function to read ACNUC SMJYT index files
Positions of possibly degenerated motifs within sequences
Exchange two R objects
Statistical over- and under- representation of dinucleotides in a
sequence
Codon usage indices
Write sequence(s) into a file in fasta format
Scans databases for a given sequence accession number
Synonymous codons
Light absorption by the water column
A toy example of codon counts in three coding sequences
Weight of each synonymous codon
Random synonymous coding sequence generation
Translate nucleic acid sequences into proteins
To get all words from an alphabet.