Returns an object of (S3) class alignment.
as.alignment(nb = NULL, nam = NULL, seq = NULL, com = NULL)An object of class alignment which is a list with the following components:
the number of aligned sequences
a vector of strings containing the names of the aligned sequences
a vector of strings containing the aligned sequences
a vector of strings containing the commentaries for each sequence or NA if there are no comments
integer. The number of sequences in the alignment.
vector of nb character strings. The sequence names.
vector of nb character strings. The aligned sequences.
vector of nb character strings. The comments about sequences.
D. Charif, J.R. Lobry
citation("seqinr")
read.alignment,
as.matrix.alignment, read.fasta,
write.fasta, reverse.align, dist.alignment.
as.alignment(nb = 2, nam = c("one", "two"),
seq = c("-ACGT", "GACG-"), com = c("un", "deux"))
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