seqminer (version 0.1)

rvmeta.readDataByGene: Read a gene from VCF file and return a genotypes matrix

Description

Read a gene from VCF file and return a genotypes matrix

Usage

rvmeta.readDataByGene(scoreTestFiles, covFiles, geneFile,
    gene)

Arguments

scoreTestFiles

score test output file (rvtests outputs)

covFiles

covaraite files (vcf2ld_gene outputs)

geneFile

speicify which gene file to extract (need to be refFlat format)

gene

speicify which gene to extract

Value

• a list of genes, and each elements contain genotype covariance within gene and associated score test statsitics.