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seqminer (version 0.1)
Efficiently Read Variant Call Format (VCF) into R
Description
Integrate sequencing data (VCF) or meta-analysis results in R
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Install
install.packages('seqminer')
Monthly Downloads
675
Version
0.1
License
GPL
Maintainer
Xiaowei Zhan
Last Published
March 20th, 2013
Functions in seqminer (0.1)
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readVCFToListByGene
Read a gene from VCF file and return a genotypes matrix
readVCFToMatrixByGene
Read a gene from VCF file and return a genotypes matrix
rvmeta.readScoreByRange
Read score test statistics
readVCFToMatrixByRange
Read a gene from VCF file and return a genotypes matrix
tabix
Read tabix file
rvmeta.readDataByGene
Read a gene from VCF file and return a genotypes matrix
rvmeta.readCovByRange
Read covariance
readVCFToListByRange
Read a gene from VCF file and return a genotypes matrix
hasIndex
Check input file has tabix index
rvmeta.readDataByRange
Read a range from VCF file and return a genotypes matrix