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seqminer (version 0.1)

rvmeta.readDataByRange: Read a range from VCF file and return a genotypes matrix

Description

Read a range from VCF file and return a genotypes matrix

Usage

rvmeta.readDataByRange(scoreTestFiles, covFiles, ranges)

Arguments

scoreTestFiles
score test output file (rvtests outputs)
covFiles
covaraite files (vcf2ld_gene outputs)
ranges
speicify which range to extract (e.g. 1:100-200)

Value

  • a list of variants, and each elements contain genotype covariance within gene and associated score test statsitics.