Rdocumentation
powered by
Learn R Programming
⚠️
There's a newer version (9.7) of this package.
Take me there.
seqminer (version 2.0)
Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R
Description
Integrate sequencing data (VCF) or meta-analysis results in R
Copy Link
Link to current version
Version
Version
9.7
9.4
9.3
9.1
8.9
8.6
8.5
8.4
8.2
8.0
7.1
7.0
6.7
6.1
6.0
5.9
5.7
5.3
5.2
5.0
4.9
4.7
4.5
4.2
3.9
3.7
3.4
3.1
3.0
2.7
2.2
2.0
1.9.1
1.4
1.3
1.0
0.7
0.5
0.3
0.2
0.1
Install
install.packages('seqminer')
Monthly Downloads
675
Version
2.0
License
GPL | file LICENSE
Maintainer
Xiaowei Zhan
Last Published
November 20th, 2013
Functions in seqminer (2.0)
Search all functions
rvmeta.readCovByRange
Read covariance by range from METAL-format files.
readVCFToListByGene
Read information from VCF file in a given range and return a list
rvmeta.readSkewByRange
Read skew by range from METAL-format files.
tabix.read.header
Read tabix file, similar to running tabix in command line.
SeqMiner
Efficiently Read Sequencing Data (VCF format, METAL format) into R
readVCFToListByRange
Read information from VCF file in a given range and return a list
rvmeta.readDataByRange
Read association statistics by range from METAL-format files. Both score statistics and covariance statistics will be extracted.
tabix.read.table
Read tabix file, similar to running tabix in command line.
rvmeta.readScoreByRange
Read score test statistics by range from METAL-format files.
rvmeta.readDataByGene
Read association statistics by gene from METAL-format files. Both score statistics and covariance statistics will be extracted.
readVCFToMatrixByRange
Read a gene from VCF file and return a genotypes matrix
rvmeta.readNullModel
Read null model statistics
tabix
Read tabix file, similar to running tabix in command line.
hasIndex
Check input file has tabix index
readVCFToMatrixByGene
Read a gene from VCF file and return a genotypes matrix