seqminer (version 2.0)

rvmeta.readCovByRange: Read covariance by range from METAL-format files.

Description

Read covariance by range from METAL-format files.

Usage

rvmeta.readCovByRange(covFile, tabixRange)

Arguments

covFile

character, a covariance file (rvtests outputs using --meta cov)

tabixRange

character, a text indicating which range in the VCF file to extract. e.g. 1:100-200

Value

• a matrix of covariance within given range

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer")
cfh <- rvmeta.readCovByRange(covFileName, "1:196621007-196716634")