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shiftR (version 1.2)

Fast Enrichment Analysis via Circular Permutations

Description

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with with efficient correction for multiple testing.

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Install

install.packages('shiftR')

Monthly Downloads

137

Version

1.2

License

LGPL-3

Issues

0

Pull Requests

0

Stars

1

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Maintainer

Andrey A Shabalin

Last Published

January 13th, 2018

Functions in shiftR (1.2)

shiftR-package

Fast Enrichment Analysis via Circular Permutations
shiftrPermBinary

Fast Enrichment Testing on Binary Outcomes via Circular Permutations
getOffsets

Generate Random or Uniformly Spaced Permutation Offsets
matchDatasets

Match Two Data Sets by Location
cramerV

Calculate Cramer's V (phi) Coefficient
enrichmentAnalysis

Fast Enrichment Testing via Circular Permutations on Non-Binary Outcomes
singlePermutation

Count Feature Overlap Under a Permutation
shiftrPrepare

Prepare Data for Fast Circular Permutation Analysis
simulate

Generate Artificial Data for Tests and Illustrations