shiftR v1.4


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Fast Enrichment Analysis via Circular Permutations

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

Functions in shiftR

Name Description
cramerV Calculate Cramer's V (phi) Coefficient
enrichmentAnalysis Fast Enrichment Testing via Circular Permutations on Non-Binary Outcomes
singlePermutation Count Feature Overlap Under a Permutation
shiftrPrepare Prepare Data for Fast Circular Permutation Analysis
simulate Generate Artificial Data for Tests and Illustrations
getOffsets Generate Random or Uniformly Spaced Permutation Offsets
shiftR-package Fast Enrichment Analysis via Circular Permutations
shiftrPermBinary Fast Enrichment Testing on Binary Outcomes via Circular Permutations
matchDatasets Match Two Data Sets by Location
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Vignettes of shiftR

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Last month downloads


Type Package
Date 2018-03-02
License LGPL-3
VignetteBuilder knitr
NeedsCompilation yes
Packaged 2018-03-02 19:23:50 UTC; Andrey
Repository CRAN
Date/Publication 2018-03-03 22:53:45 UTC

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