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sigsquared (version 1.4.0)

Gene signature generation for functionally validated signaling pathways

Description

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

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Version

Version

1.4.0

License

GPL version 3

Maintainer

UnJin Lee

Last Published

February 15th, 2017

Functions in sigsquared (1.4.0)

ensembleAdjustable

Application of geneSignature object
geneSignature-class

Class "geneSignature"
analysisPipeline

Training of thresholds
BrCa443

Breast Cancer 443 Data Set
sigsquared

The sigsquared package
setGeneSignature

geneSignature functions