solve_ode

A wrapper for the ode function that solves a system of
ordinary differential equations described using symbolic equations.

Implements statistical inference for systems of ordinary differential equations,
that uses the integral-matching criterion and takes advantage of the separability of parameters,
in order to obtain initial parameter estimates for nonlinear least squares optimization.
Dattner & Yaari (2018) <arXiv:1807.04202>.
Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>.
Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.

Rami Yaari

simode

Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching

Itai Dattner

solve_ode function

<dl><dt>equations</dt>
<dd>The equations describing the ODE system. See simode.</dd>
<dt>pars</dt>
<dd>The parameter values. Named according to their names in <code>equations</code>.</dd>
<dt>x0</dt>
<dd>The initial conditions. Named accroding to the names of <code>equations</code>.</dd>
<dt>time</dt>
<dd>The time points for which the ODE variables' values will be computed.</dd>
<dt>xvars</dt>
<dd>External observations of time-dependant variables refered to in <code>equations</code></dd>
<dt>...</dt>
<dd>Additional argument(s) for methods.</dd></dl>

Arguments

Ordinary differential equations solver — solve_ode

<dl>

<dt>equations</dt>
<dd>The equations describing the ODE system. See simode.</dd>


<dt>pars</dt>
<dd>The parameter values. Named according to their names in <code>equations</code>.</dd>


<dt>x0</dt>
<dd>The initial conditions. Named accroding to the names of <code>equations</code>.</dd>


<dt>time</dt>
<dd>The time points for which the ODE variables' values will be computed.</dd>


<dt>xvars</dt>
<dd>External observations of time-dependant variables refered to in <code>equations</code></dd>


<dt>...</dt>
<dd>Additional argument(s) for methods.</dd>

</dl>

solve_ode: Ordinary differential equations solver

Description

Usage

Value

Arguments