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simode (version 1.2.2)

Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching

Description

Implements statistical inference for systems of ordinary differential equations, that uses the integral-matching criterion and takes advantage of the separability of parameters, in order to obtain initial parameter estimates for nonlinear least squares optimization. Dattner & Yaari (2018) . Dattner et al. (2017) . Dattner & Klaassen (2015) .

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Version

Install

install.packages('simode')

Monthly Downloads

152

Version

1.2.2

License

GPL (>= 2)

Maintainer

Rami Yaari

Last Published

February 16th, 2024

Functions in simode (1.2.2)

plot.profile.simode

Plot the likelihood profiles for the model parameters
plot_trace

Plot optimization trace of a call to simode
print.confint.simode

Print method for confint.simode objects
print.simode

Print method for simode objects
plot.simode

Plot the fit/estimates of a simode object
confint.profile.simode

Calculates confidence intervals for the model parameters
print.profile.simode

Print method for profile.simode objects
plot.confint.simode

Plot confidence intervals for the model parameters
plot.list.simode

Plot the fit/estimates of a list.simode object
print.summary.simode

Print method for summary.simode objects
profile.simode

Calculate likelihood profiles for the model parameters
summary.simode

Summary method for simode objects
simode

Statistical inference of ordinary differential equations using separable integral-matching
solve_ode

Ordinary differential equations solver
summary.list.simode

Summary method for list.simode objects
simode.control

Class containing control parameters for a call to simode
sir_example

Example dataset for a multi-group SIR model