summary.list.simode

Summary method for <code>list.simode</code> objects

Implements statistical inference for systems of ordinary differential equations,
that uses the integral-matching criterion and takes advantage of the separability of parameters,
in order to obtain initial parameter estimates for nonlinear least squares optimization.
Dattner & Yaari (2018) <arXiv:1807.04202>.
Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>.
Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.

Rami Yaari

simode

Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching

Itai Dattner

summary.list.simode function

<dl><dt>object</dt>
<dd><code>list.simode</code> object returned by a call to <code>simode</code>
with <code>obs_sets&gt;1</code></dd>
<dt>sum_mean_sd</dt>
<dd>Whether to calculate mean and standard deviation
for the parameter estimates in the fits included in the given <code>object</code>.
To be used when <code>object</code> is the result of fitting monte-carlo simulations.</dd>
<dt>pars_true</dt>
<dd>The true parameter values (relevant only for
when <code>sum_mean_sd=T</code>). When given, the summary will also include the
bias and RMSE for each parameter estimate.</dd>
<dt>digits</dt>
<dd>The number of significant digits to use.</dd>
<dt>...</dt>
<dd>Additional argument(s) for methods.</dd></dl>

Arguments

Summary method for list.simode objects — summary.list.simode

<dl>

<dt>object</dt>
<dd><code>list.simode</code> object returned by a call to <code>simode</code>
with <code>obs_sets&gt;1</code></dd>


<dt>sum_mean_sd</dt>
<dd>Whether to calculate mean and standard deviation
for the parameter estimates in the fits included in the given <code>object</code>.
To be used when <code>object</code> is the result of fitting monte-carlo simulations.</dd>


<dt>pars_true</dt>
<dd>The true parameter values (relevant only for
when <code>sum_mean_sd=T</code>). When given, the summary will also include the
bias and RMSE for each parameter estimate.</dd>


<dt>digits</dt>
<dd>The number of significant digits to use.</dd>


<dt>...</dt>
<dd>Additional argument(s) for methods.</dd>

</dl>

summary.list.simode: Summary method for `list.simode` objects

Description

Usage

Value

Arguments