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simphony (version 1.0.3)

Simulating Large-Scale, Rhythmic Data

Description

A tool for simulating rhythmic data: transcriptome data using Gaussian or negative binomial distributions, and behavioral activity data using Bernoulli or Poisson distributions. See Singer et al. (2019) .

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Install

install.packages('simphony')

Monthly Downloads

238

Version

1.0.3

License

GPL-2

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Maintainer

Jake Hughey

Last Published

August 9th, 2022

Functions in simphony (1.0.3)

getExpectedAbund

Calculate expected abundance
getSampledAbund

Sample abundance values
splitDiffFeatureGroups

Split differential featureGroups
simphony

Simulate feature abundance data
mergeSimData

Merge abundance data, feature metadata, and sample metadata
defaultDispFunc

Default function for mapping expected counts to dispersion.