defaultDispFunc

The function was estimated from circadian RNA-seq data from mouse liver
(PRJNA297287), using local regression in <code>DESeq2</code>. In a negative binomial
distribution, \(variance = mean + mean^2 * dispersion\).

datasets

A tool for simulating rhythmic data: transcriptome data using
Gaussian or negative binomial distributions, and behavioral activity data
using Bernoulli or Poisson distributions. See Singer et al. (2019)
<doi:10.7717/peerj.6985>.

Jake Hughey

simphony

Simulating Large-Scale, Rhythmic Data

Jordan Singer

Darwin Fu

defaultDispFunc function

An object of class <code>function</code> of length 1.

Format

<dl><dt>x</dt>
<dd>Numeric vector of mean counts.</dd></dl>

Arguments

Default function for mapping expected counts to dispersion. — defaultDispFunc

<dl>

<dt>x</dt>
<dd>Numeric vector of mean counts.</dd>

</dl>

defaultDispFunc: Default function for mapping expected counts to dispersion.

Description

Usage

Value

Format

Arguments

See Also

Examples