skewr (version 1.4.2)

getBarcodes: Get barcodes from idat file names

Description

A convenience function for retrieving simple barcodes from idat file names.

Usage

getBarcodes(path = getwd(), recurse = FALSE)

Arguments

path

The path or a character vector to the directory or directories in which to find the idat files.

recurse

logical; should the function check subdirectories to derive barcodes from any found idat files. The default is FALSE.

Value

• A character vector of barcodes.

Details

Barcodes will be generated by all found idats in path(s). The default path is the current working directory.

See Also

getMethyLumiSet

Examples

if(require(minfiData)){
  path <- system.file("extdata/5723646052", package="minfiData")
  barcodes <- getBarcodes(path = path)
}